PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00290.120
Common NameJCGZ_13335, LOC105639368
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 206aa    MW: 23089.8 Da    PI: 6.7866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00290.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19554154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + 
  Jcr4S00290.120  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRIWLGTFETAEEAARAYDQAAILMS 54
                    59*******9.**********8.....334*********************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-34565No hitNo description
SuperFamilySSF541717.85E-21665IPR016177DNA-binding domain
SMARTSM003808.9E-40669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-33663IPR001471AP2/ERF domain
PfamPF008475.1E-12653IPR001471AP2/ERF domain
PROSITE profilePS5103221.878663IPR001471AP2/ERF domain
PRINTSPR003671.3E-10718IPR001471AP2/ERF domain
PRINTSPR003671.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVHSKKFRGV RQRHWGSWVS EIRHPLLKRR IWLGTFETAE EAARAYDQAA ILMSGRNAKT  60
NFPINQDPNP SEPSSSTNAA SCYQSNGLSE ILHAKLRKCS KAPSPSMTCL RLDTENSHIG  120
VWQKRAGQRS DSDWVMTAQL GNRDHQEGSD STLASGESSK TLPVPELKSE MDEEERIALQ  180
MIEELLNRNC PSPSFGVQDE DGSFFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-16564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078789.11e-154PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI335e-76WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A067KJG81e-154A0A067KJG8_JATCU; Uncharacterized protein
STRINGPOPTR_0018s13130.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.14e-67ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]